Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs56147256 | chr5:79940560 | C/A | 0.000105 | 214 | 18.65 | 14.83 | 9.77 | KM Plot |
| KIRP | rs56157377 | chr16:4530246 | G/A | 3.38E-6 | 214 | 16.45 | 12.63 | 10.83 | KM Plot |
| KIRP | rs56184290 | chr3:129328539 | A/G | 0.00015 | 207 | 15.88 | 17.5 | 11.2 | KM Plot |
| KIRP | rs56189111 | chr6:28271973 | C/A | 1.98E-7 | 214 | 16.45 | 13.6 | 9.77 | KM Plot |
| KIRP | rs56191919 | chr16:4527749 | G/A | 3.38E-6 | 214 | 16.45 | 12.63 | 10.83 | KM Plot |
| KIRP | rs56195435 | chr8:30051636 | T/C | 1.13E-6 | 212 | 15.07 | 18.47 | 0.2 | KM Plot |
| KIRP | rs56219164 | chr14:96055467 | G/A | 9.24E-7 | 213 | 14.68 | 23.1 | 9.77 | KM Plot |
| KIRP | rs56225483 | chr17:80712716 | C/T | 8.85E-5 | 211 | 15.33 | 17.6 | 15.15 | KM Plot |
| KIRP | rs56235717 | chr16:4524374 | C/T | 3.38E-6 | 214 | 16.45 | 12.63 | 10.83 | KM Plot |
| KIRP | rs56259547 | chr17:80683519 | G/A | 4.65E-6 | 206 | 16.43 | 17.2 | 15.15 | KM Plot |
| KIRP | rs56268318 | chr16:47621573 | G/C | 7.92E-8 | 213 | 17.2 | 12.9 | 12.85 | KM Plot |
| KIRP | rs56268356 | chr16:648575 | A/G | 7.03E-5 | 212 | 16.53 | 14.13 | 6.57 | KM Plot |
| KIRP | rs56274257 | chr2:86364706 | TG/T | 2.02E-6 | 214 | 11.43 | 14.7 | 16.47 | KM Plot |
| KIRP | rs56280493 | chr17:74159570 | C/T | 0.000385 | 212 | 16.5 | 10.83 | 12.1 | KM Plot |
| KIRP | rs56311458 | chr9:112110282 | A/AG | 0 | 204 | 16.93 | 15.9 | 0.97 | KM Plot |